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References - Progenesis QI - Nonlinear

Progenesis QI software references 2019. Alldritt I, Whitham-Agut B, Sipin M, Studholme J, Trentacoste A, Tripp JA, Cappai MG, Ditchfield P, Deviese T, Hedges REM, McCullagh JSO (2019) Metabolomics reveals diet-derived plant polyphenols accumulate in physiological bone.

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References - Progenesis QI for proteomics - Nonlinear

Progenesis QI for proteomics software references 2019. Abdulwahab RA, Alaiya A, Shinwari Z, Allaith AAA, Giha HA (2019) LCMS/MS proteomic analysis revealed novel associations of 37 proteins with T2DM and notable upregulation of immunoglobulins. Int J Mol Med 43:2118-2132

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Which method should I use to choose the alignment reference?

Progenesis QI provides three methods for choosing the alignment reference run, as seen below: These three options and their use cases are described below. 1. Assess all runs in the experiment for suitability. This method compares every run in your experiment to every other run for similarity.

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Progenesis QI - Nonlinear

Progenesis QI is small molecule discovery analysis software for your LC-MS data; a revolutionary ‘difference engine’ that works in a unique way to help you to answer your biological question. “Progenesis QI has become the standard software for processing our metabolic profiling data; it has increased our processing speed, from aligning ...

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Progenesis QI - Nonlinear

Nonlinear Dynamics Progenesis software. Progenesis QI enables you to accurately quantify and identify the compounds in your samples that are significantly changing. More information. Progenesis QI for proteomics enables you to quantify and identify proteins in your complex samples using the advantages of label-free analysis. More information.

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Progenesis QI for proteomics - Nonlinear

Progenesis QI for proteomics is discovery analysis software for your LC-MS data; a revolutionary ‘difference engine’ that works in a unique way to help you to answer your biological question. “We went from spending countless hours analyzing thousands of lines on spreadsheets, to completely automated quantitative proteomics performed in ...

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Progenesis QI for proteomics User Guide - Nonlinear

Progenesis QI for Proteomics User Guide 5 Restoring a Tutorial Archive The data in the tutorial archive (Progenesis QI.P_Tutorial HDMSe.ProgenesisQIPArchive) is part of the Progenesis QI for Proteomics demo suite. Download and uncompress the zipped archive from the link on the website. Now restore the uncompressed tutorial archive file.

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Progenesis QI DSA User Guide - Nonlinear

Progenesis QI Direct Sample Analysis User Guide 5 Create an Experiment The first step in Progenesis QI is to create the experiment – a project within which you can carry out the analysis of your data. You will need some basic information about your experiment. To create a new Direct Sample Analysis experiment: 1. Load Progenesis QI v3.0. 2.

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Coverwise - Progenesis QI - Nonlinear

Support is important. When you buy a cutting edge piece of technology like Progenesis QI, you need to know that you will get the most out of it over the years to come. As with an instrument, you don't want to buy something that becomes a ‘white elephant’ in your laboratory, gathering dust because it has failed to keep pace with the advance ...

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Progenesis QI DSA User Guide - Nonlinear

Progenesis QI Direct Sample Analysis User Guide 5 Create an Experiment The first step in Progenesis QI is to create the experiment – a project within which you can carry out the analysis of your data. You will need some basic information about your experiment. To create a new Direct Sample Analysis experiment: 1. Load Progenesis QI v3.0. 2.

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Progenesis QI for proteomics What's new in the ... - Nonlinear

Progenesis QI for proteomics v4.0. Integration with Symphony – save data handling time You can now initiate a Progenesis QI for proteomics experiment within the Symphony™ data pipeline. This means you can combine the efficiencies and flexibility of Symphony with the renowned user friendliness of Progenesis QI for proteomics.

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Progenesis QI - Nonlinear

nonlinear A Waters Company Progenesis' QI . e t quality: CJ OK Needs rev 30 2 Review alignment quality ... compare compound abundance across the groups you set 1 Choose the runs to import, apply automatic reference run selection and alignment then walk away! nonlinear A Waters Company Progenesis' QI . nonlinear A Waters Company Progenesis' QI ...

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A Multi-omic Approach for the Study of Heart ... - Nonlinear

Progenesis QI/QI for Proteomics searches were subjected to pathway analysis. Lipid metabolism, platelet activation, signalling, and aggregation were highlighted as significant. References 1. Kikuchi. Advances in understanding the mechanism of zebrafish heart regeneration. Stem Cell

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Progenesis QI for proteomics speeds up biopharmaceutical ...

Dec 07, 2018  The Discovery HCP assay is performed in SONAR TM mode in order to identify the unknown HCPs present in the purified biopharmaceutical and Progenesis QI for proteomics (QIP) is used for a proteome-wide database search to reveal the identity of these HCPs. For example, in the case of the NIST mAb, four HCPs and three spiked proteins (ADH, PHO and BSA) were identified as

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Progenesis QI turns food standards detective – Nonlinear ...

Dec 01, 2014  The data generated were analysed in Progenesis QI with supplementary visualisations in EZinfo . One of the strengths of metabolomics and subsequent multivariate statistical analysis is that a huge range of data points can be simultaneously quantitated, and samples classified sensitively based on correlated differences arising across the data set.

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Progenesis QI for proteomics – Nonlinear Dynamics blog

Nov 25, 2019  Natural Product Atlas Library for Progenesis QI and UNIFI; Help with remote working and Progenesis; CEO Update on COVID-19; Happy New Year; 30 years of Nonlinear Dynamics; Archive. June 2020 (1) March 2020 (2) January 2020 (1) December 2019 (1) November 2019 (1) October 2019 (1) September 2019 (1) August 2019 (1) July 2019 (1) June 2019 (1 ...

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Missing values: the Progenesis co-detection solution ...

May 09, 2016  Natural Product Atlas Library for Progenesis QI and UNIFI; Help with remote working and Progenesis; CEO Update on COVID-19; Happy New Year; 30 years of Nonlinear Dynamics; Archive. June 2020 (1) March 2020 (2) January 2020 (1) December 2019 (1) November 2019 (1) October 2019 (1) September 2019 (1) August 2019 (1) July 2019 (1) June 2019 (1 ...

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Intratumour heterogeneity in microRNAs expression ...

Aug 05, 2021  Metabolomics raw data were pre-processed with Progenesis QI (Nonlinear Dynamics) in which peak picking, peak matching and annotation using between-subject experimental design were

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Progenesis QI LC/MS数据分析软件用于组学研究 沃特世

Progenesis QI是新一代LC-MS数据分析软件,使您能够定量然后识别样品中变化明显的“小分子”、脂质和蛋白质。提供两种软件:一种是用于小分子和脂质的Progenesis QI,另一种是用于蛋白质的Progenesis QI for Proteomics。 ... Nonlinear Dynamics集中资源专注于为组学数据分析 ...

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METABOLOMICS PROFILING USING ATMOSPHERIC

Data were processed and analyzed using Progenesis QI (nonlinear Dynamics, New Castle, UK). REFERENCES 1. Pacchiarotta T, Derks RJ, Hurtado-Fernandez E, van Bezooijen P, Henneman A, Schiewek R, Fernández-Gutiérrez A, Carrasco-Pancorbo A, Deelder AM, Mayboroda OA.Online spectral library for GC-atmospheric pressure chemical

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Frontiers A Multiomics Approach Unravels New Toxins With ...

Jul 17, 2020  For quantitative peptidomics, mass spectrometry raw data of the native venom peptides were loaded in Progenesis QI for proteomics (Nonlinear Dynamics, Newcastle, UK). Briefly, a reference run for the duplicates was automatically selected. The retention times of precursor ions were processed for alignment, peak picking and normalized to the ...

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Label-free profiling of skeletal muscle using high ...

Oct 04, 2016  Finally, we performed the first label-free profiling of muscle using the recently released Progenesis QI for Proteomics (QIP) application (Nonlinear Dynamics, Newcastle, UK) that has been specifically developed to combine the strengths of IMS and DIA, i.e. HDMS E.

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Progenesis QI for Proteomics from Nonlinear Dynamics ...

Progenesis QI for Proteomics by Nonlinear Dynamics. Progenesis® QI for Proteomics enables you to quantify and identify proteins in your complex samples using the advantages of label-free analysis. With support for all common vendor data formats and a guided workflow, Progenesis QI for Proteomics helps to overcome your data analysis challenges ...

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Label-free profiling of skeletal muscle using high ...

Oct 04, 2016  Finally, we performed the first label-free profiling of muscle using the recently released Progenesis QI for Proteomics (QIP) application (Nonlinear Dynamics, Newcastle, UK) that has been specifically developed to combine the strengths of IMS and DIA, i.e. HDMS E.

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FBMN with Progenesis QI - GNPS Documentation

In Progenesis QI (ver. 2.4, Nonlinear Dynamics), import RAW data from Waters QTof data-independent acquisition (DIA) modes such as SONAR, MSE or HDMSE. Processed data with Progenesis QI and export the results for GNPS analysis as indicated below. See the Progenesis QI LC-MS tutorial and the tutorial videos for more informations. 2.

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(PDF) The Good, the Better and the Best of Progenesis QI

In brief, the raw data was imported to Progenesis QI, ver. 2.2 (Nonlinear Dynamics), and automatically aligned to a reference chromatograph [38]. Peak picking limits were set to default automatic ...

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High resolution mass spectrometric data analysis using ...

Acquired data were processed using Progenesis QI ™ software (Nonlinear Dynamics, Newcastle upon Tyne,UK), consisting of raw data import, selection of possible adducts, peak set alignment, peak detection, deconvolution, data set filtering, noise reduction, compound identification and normalization with internal standards.

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Progenesis QI Software Waters

Aug 08, 2021  Progenesis QI is the next generation LC-MS data analysis software that enables you to Quantify and then Identify the ‘small molecules’, lipids, and proteins that are significantly changing in your samples.There are two pieces of software: Progenesis QI for small molecules and lipids; Progenesis QI for proteomics for proteins. With support for all common vendor data formats and a highly ...

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Progenesis QI installation problem during the dongle ...

Jul 15, 2021  Where can I get help with Progenesis QI products? - WKB58376 ANSWER: Contact the Nonlinear support group via [email protected]; How to set up a Progenesis dongle - WKB61889 OBJECTIVE: Set up a Progenesis dongle. PROCEDURE: Install Progenesis QI (or QI for proteomics). Open the installed program and, in the lower left-hand...

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Frontiers A Multiomics Approach Unravels New Toxins With ...

Jul 17, 2020  For quantitative peptidomics, mass spectrometry raw data of the native venom peptides were loaded in Progenesis QI for proteomics (Nonlinear Dynamics, Newcastle, UK). Briefly, a reference run for the duplicates was automatically selected. The retention times of precursor ions were processed for alignment, peak picking and normalized to the ...

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A complex matrix characterization approach, applied to ...

Sep 03, 2019  Combined full-scan and data-dependent fragmentation data were processed using Progenesis QI™ software (Nonlinear Dynamics, Newcastle upon Tyne, UK), comprising raw data import, alignment, feature extraction, deconvolution, normalization with ISTDs, followed by compound annotation and ID. The pool sample was used as an alignment reference.

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Intratumour heterogeneity in microRNAs expression ...

Aug 05, 2021  Metabolomics raw data were pre-processed with Progenesis QI (Nonlinear Dynamics) in which peak picking, peak matching and annotation using between-subject experimental design were

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Progenesis QI液质联用数据分析 ... - Waters Corporation

Progenesis QI已经成为我们处理代谢物谱图数据的标准软件,它大大加快了我们的处理速度,从对齐谱图到识别出存在显著变化的代谢物,我们的处理速度比以前至少快10倍! ... Progenesis能提供高水准的结果,其Nonlinear辅助和交互功能更是令人赞叹。

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FBMN with Progenesis QI - GNPS Documentation

FBMN with Progenesis QI Introduction. The Feature-Based Molecular Networking (FBMN) is a computational method that bridges popular mass spectrometry data processing tools for LC-MS/MS and molecular networking analysis on GNPS.The tools supported are: MZmine2, OpenMS, MS-DIAL, MetaboScape, XCMS, and Progenesis QI. The main documentation for FBMN can be accessed here.

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Progenesis QI Agilent Q-TOF and TOF Folder Reader plugin ...

Progenesis QI Agilent Q-TOF and TOF Folder Reader plugin is developed by Nonlinear Dynamics. The most popular versions of this product among our users are: 20.4, 24.7 and 27.2. The product will soon be reviewed by our informers.

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The WEIZMASS spectral library for high-confidence ...

Aug 30, 2016  The outputs of MatchWeiz and Progenesis QI were filtered using a threshold set to 50% of the maximum respective annotation score, and in cases of

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Nonlinear Dynamics blog - FeedBurner

News and tips from the people who make Progenesis QI, data analysis software for proteomics and metabolomics. Nonlinear Dynamics blog A library that contains structures of

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